Jump to content

User:Jlmaier12/CrAssphage/Bibliography

From Wikipedia, the free encyclopedia

Bibliography

[edit]
  • Morozova, Vera; Fofanov, Mikhail; Tikunova, Nina; Babkin, Igor; Morozov, Vitaliy; Tikunov, Artem. 2020. "First crAss-like phage genome encoding the diversity-generating retroelement (DGR)". Viruses.[1]
    • This is a peer-reviewed journal article describing the discovery of a diversity-generating retroelement (DGR) within a crAssphage isolated from a human fecal sample. The discovery was important because DRGs found in other phage play roles in changing host-recognition structures which allow phage to more easily adapt to changes of their bacterial host.
  • Rossi, Alessandro; Treu, Laura; Toppo, Stefano; Zschach, Henrike; Campanaro, Stefano; Dutilh, Bas. 2020. "Evolutionary study of the crAssphage virus at gene level". Viruses[2]
    • This is a peer-reviewed journal article in which the authors attempt to identify regions of conservation amongst crAssphage genomes. Through this research, insights were made as to how crAssphages have co-evolved with their hosts.
  • Siranosian, Benjamin; Tamburini, Fiona; Sherlock, Gavin; Bhatt, Ami. 2020. "Acquisition, transmission, and strain diversity of human gut-colonizing crAss-like phages". Nat Commun[3]
    • This peer-reviewed journal article focuses on the analysis of mother-infant pairs and patients having undergone fecal microbiota transplants to study crAss-like phage acquisition. The study revealed that crAss-like phage follow a vertical transmission pattern from mother to offspring and that crAss-like phage can be stably acquired through fecal transplants.
  • Honap, Tanvi; Sankaranarayanan, Krithivasan; Schnorr Stephanie; Ozga, Andrew; Warinner, Christina; Lewis, Cecil. 2020. "Biogeographic study of human gut-associated crAssphage suggests impacts from industrialization and recent expansion". PLoS One[4]
    • This is a peer-reviewed journal article that describes the prevalence of crAssphage in various populations around the globe. The researchers found that the presence of crAssphage is near universal across human populations, however crAssphage presence is more closely associated with the consumption of a western diet than a Mediterranean diet.
  • Edwards, Robert; Vega, Alejandro; Norman, Holly; et al. 2019. "Global phylogeography and ancient evolution of the widespread human gut virus crAssphage". Nat Microbiol[5]
    • This peer-reviewed article described the analysis of crAssphage DNA samples from >1,000 individuals around the world. The researchers find that crAssphage are a benign, yet integral, inhabitant of the human gut and have likely co-evolved with humans since the evolution of the human lineage.
  • Farkas, Kata; Adriaenssens, Evelien; Walker, David; McDonald, James; Malham, Shelagh; Jones, Davey. 2019. "Critical evaluation of crAssphage as a molecular marker for human-derived wastewater contamination in the aquatic environment". Food Environ Virol[6]
    • This peer-reviewed journal article focused on the assessment of crAssphage as a marker for waste-water contamination in aquatic environments. The study found that qPCR could be used to accurately detect crAssphage in the majority of river and estuarine water samples for up to a year of consistent observation.
  • Shkoporov, Andrey; Clooney, Adam; Sutton, Thomas; et al. 2019. "The human gut virome is highly diverse, stable, and individual specific". Cell Host Microbe[7]
    • This is a peer-reviewed journal article that describes the analysis of the human gut virome through longitudinal metagenomic analysis of fecal samples. The researchers found several phage groups that represent the stable colonizers within human guts while other phage groups are more variable and specific to the host. Additionally, the study revealed that phage-host interactions in the gut don't follow the typical kill-the-winner dynamic, but instead the phage and hosts are maintained at a relatively stable equilibrium on the species level and above.
  • de Jonge, Patrick; von Meijenfeldt, Bastiaan; van Rooijen, Laura; Brouns, Stan; Dutilh, Bas. 2019. "Evolution of BACON domain tandem repeats in crAssphage and novel gut bacteriophage lineages" Viruses[8]
    • This is a peer-reviewed journal article that focuses on the analysis of BACON domains in over 2 million viral contigs. The study found that crAssphage BACON tandem repeats are closely related to the BACON tandem repeats found in Bacteriodetes, the crAssphage host, suggesting high rates of horizontal transfer between phage and host.

References

[edit]
  1. ^ Morozova, Vera; Fofanov, Mikhail; Tikunova, Nina; Babkin, Igor; Morozov, Vitaliy V.; Tikunov, Artem (2020-05-22). "First crAss-Like Phage Genome Encoding the Diversity-Generating Retroelement (DGR)". Viruses. 12 (5): E573. doi:10.3390/v12050573. ISSN 1999-4915. PMC 7290462. PMID 32456083.{{cite journal}}: CS1 maint: unflagged free DOI (link)
  2. ^ Rossi, Alessandro; Treu, Laura; Toppo, Stefano; Zschach, Henrike; Campanaro, Stefano; Dutilh, Bas E. (2020-09-17). "Evolutionary Study of the Crassphage Virus at Gene Level". Viruses. 12 (9): E1035. doi:10.3390/v12091035. ISSN 1999-4915. PMC 7551546. PMID 32957679.{{cite journal}}: CS1 maint: unflagged free DOI (link)
  3. ^ Siranosian, Benjamin A.; Tamburini, Fiona B.; Sherlock, Gavin; Bhatt, Ami S. (2020-01-15). "Acquisition, transmission and strain diversity of human gut-colonizing crAss-like phages". Nature Communications. 11 (1): 280. doi:10.1038/s41467-019-14103-3. ISSN 2041-1723. PMC 6962324. PMID 31941900.
  4. ^ Honap, Tanvi P.; Sankaranarayanan, Krithivasan; Schnorr, Stephanie L.; Ozga, Andrew T.; Warinner, Christina; Lewis, Cecil M. (2020). "Biogeographic study of human gut-associated crAssphage suggests impacts from industrialization and recent expansion". PloS One. 15 (1): e0226930. doi:10.1371/journal.pone.0226930. ISSN 1932-6203. PMC 6961876. PMID 31940321.{{cite journal}}: CS1 maint: unflagged free DOI (link)
  5. ^ Edwards, Robert A.; Vega, Alejandro A.; Norman, Holly M.; Ohaeri, Maria; Levi, Kyle; Dinsdale, Elizabeth A.; Cinek, Ondrej; Aziz, Ramy K.; McNair, Katelyn; Barr, Jeremy J.; Bibby, Kyle; Brouns, Stan J. J.; Cazares, Adrian; de Jonge, Patrick A.; Desnues, Christelle (2019-10). "Global phylogeography and ancient evolution of the widespread human gut virus crAssphage". Nature Microbiology. 4 (10): 1727–1736. doi:10.1038/s41564-019-0494-6. ISSN 2058-5276. {{cite journal}}: Check date values in: |date= (help)
  6. ^ Farkas, Kata; Adriaenssens, Evelien M.; Walker, David I.; McDonald, James E.; Malham, Shelagh K.; Jones, Davey L. (2019-06-01). "Critical Evaluation of CrAssphage as a Molecular Marker for Human-Derived Wastewater Contamination in the Aquatic Environment". Food and Environmental Virology. 11 (2): 113–119. doi:10.1007/s12560-019-09369-1. ISSN 1867-0342. PMC 6513805. PMID 30758724.{{cite journal}}: CS1 maint: PMC format (link)
  7. ^ Shkoporov, Andrey N.; Clooney, Adam G.; Sutton, Thomas D. S.; Ryan, Feargal J.; Daly, Karen M.; Nolan, James A.; McDonnell, Siobhan A.; Khokhlova, Ekaterina V.; Draper, Lorraine A.; Forde, Amanda; Guerin, Emma; Velayudhan, Vimalkumar; Ross, R. Paul; Hill, Colin (2019-10-09). "The Human Gut Virome Is Highly Diverse, Stable, and Individual Specific". Cell Host & Microbe. 26 (4): 527–541.e5. doi:10.1016/j.chom.2019.09.009. ISSN 1931-3128.
  8. ^ Jonge, Patrick A. de; Meijenfeldt, F. A. Bastiaan von; Rooijen, Laura E. van; Brouns, Stan J. J.; Dutilh, Bas E. (2019-11-01). "Evolution of BACON Domain Tandem Repeats in crAssphage and Novel Gut Bacteriophage Lineages". Viruses. 11 (12): 1085. doi:10.3390/v11121085. ISSN 1999-4915.{{cite journal}}: CS1 maint: unflagged free DOI (link)
Retrieved from "https://en.wikipedia.org/w/index.php?title=User:Jlmaier12/CrAssphage/Bibliography&oldid=1115504834"