Jump to content

File:Slingshot-pseudotime.png

Page contents not supported in other languages.
This is a file from the Wikimedia Commons
From Wikipedia, the free encyclopedia

Original file (1,945 × 868 pixels, file size: 139 KB, MIME type: image/png)

Summary

Description
English: Schematics of Slingshot’s main steps. The main steps for Slingshot are shown for: Panel (a) a simple simulated two-lineage two-dimensional dataset and Panel (b) the single-cell RNA-Seq olfactory epithelium three-lineage dataset of [26] (see Results and discussion for details on dataset and its analysis). Step 0: Slingshot starts from clustered data in a low-dimensional space (cluster labels indicated by color). For Panel (b), the plot shows the top three principal components, but Slingshot was run on the top five. Step 1: A minimum spanning tree is constructed on the clusters to determine the number and rough shape of lineages. For Panel (b), we impose some constraints on the MST based on known biology. Step 2: Simultaneous principal curves are used to obtain smooth representations of each lineage. Step 3: Pseudotime values are obtained by orthogonal projection onto the curves (only shown for Panel (a))
Date
Source https://bmcgenomics.biomedcentral.com/articles/10.1186/s12864-018-4772-0
Author Kelly Street, Davide Risso, Russel B. Fletcher, Diya Das, John Ngai, Nir Yosef, Elizabeth Purdom, Sandrine Dudoit

Licensing

w:en:Creative Commons
attribution
This file is licensed under the Creative Commons Attribution 4.0 International license.
You are free:
  • to share – to copy, distribute and transmit the work
  • to remix – to adapt the work
Under the following conditions:
  • attribution – You must give appropriate credit, provide a link to the license, and indicate if changes were made. You may do so in any reasonable manner, but not in any way that suggests the licensor endorses you or your use.

Captions

Add a one-line explanation of what this file represents

Items portrayed in this file

depicts

19 June 2018

File history

Click on a date/time to view the file as it appeared at that time.

Date/TimeThumbnailDimensionsUserComment
current06:17, 15 December 2018Thumbnail for version as of 06:17, 15 December 20181,945 × 868 (139 KB)SlargmanUser created page with UploadWizard

The following 2 pages use this file: